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Bellissimi, E., J. P. Van Dijken, J. T. Pronk, and A. J. A. Van Maris. 2009. Effects of acetic acid on the kinetics of xylose fermentation by an engineered, xylose-isomerase-based Saccharomyces cerevisiae strain. FEMS Yeast Research 9:358-364.

http://www3.interscience.wiley.com/journal/122206545/abstract

Geertman, J. M. A., J. P. Van Dijken, and J. T. Pronk. 2006. Engineering NADH metabolism in Saccharomyces cerevisiae: Formate as an electron donor for glycerol production by anaerobic, glucose-limited chemostat cultures. FEMS Yeast Research 6:1193-1203.

http://www3.interscience.wiley.com/journal/118600445/abstract

Geertman, J. M. A., A. J. A. van Maris, J. P. van Dijken, and J. T. Pronk. 2006. Physiological and genetic engineering of cytosolic redox metabolism in Saccharomyces cerevisiae for improved glycerol production. Metabolic Engineering 8:532-542.

http://linkinghub.elsevier.com/retrieve/pii/S1096717606000619

Harris, D. M., J. A. Diderich, Z. A. Van Der Krogt, M. A. H. Luttik, L. M. Raamsdonk, R. A. L. Bovenberg, W. M. Van Gulik, J. P. Van Dijken, and J. T. Pronk. 2006. Enzymic analysis of NADPH metabolism in β-lactam-producing Penicillium chrysogenum: Presence of a mitochondrial NADPH dehydrogenase. Metabolic Engineering 8:91-101.

http://linkinghub.elsevier.com/retrieve/pii/S1096717605000765

Jansen, M. L. A., D. J. J. Krook, K. De Graaf, J. P. Van Dijken, J. T. Pronk, and J. H. De Winde. 2006. Physiological characterization and fed-batch production of an extracellular maltase of Schizosaccharomyces pombe CBS 356. FEMS Yeast Research 6:888-901.

http://www3.interscience.wiley.com/journal/118600409/abstract

Koopman, F., N. Wierckx, J. H. de Winde, and H. J. Ruijssenaars. 2010. Efficient whole-cell biotransformation of 5-(hydroxymethyl)furfural into FDCA, 2,5-furandicarboxylic acid. Bioresource Technology 101:6291-6296.

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Koopman, F., N. Wierckx, J. H. De Winde, and H. J. Ruijssenaars. 2010. Identification and characterization of the furfural and 5-(hydroxymethyl)furfural degradation pathways of Cupriavidus basilensis HMF14. Proceedings of the National Academy of Sciences of the United States of America 107:4919-4924.

http://www.pnas.org/content/107/11/4919.short

Kuyper, M., H. R. Harhangi, A. K. Stave, A. A. Winkler, M. S. M. Jetten, W. T. A. M. De Laat, J. J. J. Den Ridder, H. J. M. Op Den Camp, J. P. Van Dijken, and J. T. Pronk. 2003. High-level functional expression of a fungal xylose isomerase: The key to efficient ethanolic fermentation of xylose by Saccharomyces cerevisiae. FEMS Yeast Research 4:69-78.

http://www3.interscience.wiley.com/journal/118856027/abstract

Kuyper, M., M. M. P. Hartog, M. J. Toirkens, M. J. H. Almering, A. A. Winkler, J. P. Van Dijken, and J. T. Pronk. 2005. Metabolic engineering of a xylose-isomerase-expressing Saccharomyces cerevisiae strain for rapid anaerobic xylose fermentation. FEMS Yeast Research 5:399-409.

http://www3.interscience.wiley.com/journal/118672673/abstract

Kuyper, M., M. J. Toirkens, J. A. Diderich, A. A. Winkler, J. P. Van Dijken, and J. T. Pronk. 2005. Evolutionary engineering of mixed-sugar utilization by a xylose-fermenting Saccharomyces cerevisiae strain. FEMS Yeast Research 5:925-934.

http://www3.interscience.wiley.com/journal/118672620/abstract

Kuyper, M., A. A. Winkler, J. P. Van Dijken, and J. T. Pronk. 2004. Minimal metabolic engineering of Saccharomyces cerevisiae for efficient anaerobic xylose fermentation: A proof of principle. FEMS Yeast Research 4:655-664.

http://www3.interscience.wiley.com/journal/118818588/abstract

Maris, A. J. A. V., W. N. Konings, J. P. V. Dijken, and J. T. Pronk. 2004. Microbial export of lactic and 3-hydroxypropanoic acid: Implications for industrial fermentation processes. Metabolic Engineering 6:245-255.

http://linkinghub.elsevier.com/retrieve/pii/S1096717604000382

Van Hoek, P., E. De Hulster, J. P. Van Dijken, and J. T. Pronk. 2000. Fermentative capacity in high-cell-density fed-batch cultures of baker's yeast. Biotechnology and Bioengineering 68:517-523.

http://www3.interscience.wiley.com/journal/72000054/abstract

van Maris, A. J. A., D. A. Abbott, E. Bellissimi, J. van den Brink, M. Kuyper, M. A. H. Luttik, H. W. Wisselink, W. A. Scheffers, J. P. van Dijken, and J. T. Pronk. 2006. Alcoholic fermentation of carbon sources in biomass hydrolysates by Saccharomyces cerevisiae: Current status. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology 90:391-418.

http://www.springerlink.com/index/q20843888246u222.pdf

Van Maris, A. J. A., J. M. A. Geertman, A. Vermeulen, M. K. Groothuizen, A. A. Winkler, M. D. W. Piper, J. P. Van Dijken, and J. T. Pronk. 2004. Directed Evolution of Pyruvate Decarboxylase-Negative Saccharomyces cerevisiae, Yielding a C2-Independent, Glucose-Tolerant, and Pyruvate-Hyperproducing Yeast. Applied and Environmental Microbiology 70:159-166.

http://aem.asm.org/cgi/content/abstract/70/1/159

Van Maris, A. J. A., M. A. H. Luttik, A. A. Winkler, J. P. Van Dijken, and J. T. Pronk. 2003. Overproduction of threonine aldolase circumvents the biosynthetic role of pyruvate decarboxylase in glucose-limited chemostat cultures of Saccharomyces cerevisiae. Applied and Environmental Microbiology 69:2094-2099.

http://aem.asm.org/cgi/content/abstract/69/4/2094

Van Maris, A. J. A., A. A. Winkler, M. Kuyper, W. T. A. M. De Laat, J. P. Van Dijken, and J. T. Pronk. 2007. Development of efficient xylose fermentation in Saccharomyces cerevisiae: Xylose isomerase as a key component, p. 179-204, Advances in Biochemical Engineering/Biotechnology, vol. 108.

http://www.springerlink.com/content/j45120307p778u77/

Van Maris, A. J. A., A. A. Winkler, D. Porro, J. P. Van Dijken, and J. T. Pronk. 2004. Homofermentative lactate production cannot sustain anaerobic growth of engineered Saccharomyces cerevisiae: Possible consequence of energy-dependent lactate export. Applied and Environmental Microbiology 70:2898-2905.

http://aem.asm.org/cgi/content/full/70/5/2898?view=long&pmid=15128549

Verhoef, S., H. Ballerstedt, R. J. M. Volkers, J. H. De Winde, and H. J. Ruijssenaars. 2010. Comparative transcriptomics and proteomics of p-hydroxybenzoate producing Pseudomonas putida S12: Novel responses and implications for strain improvement. Applied Microbiology and Biotechnology 87:679-690.

http://www.springerlink.com/content/h37644366xv56h14/

Wierckx, N., F. Koopman, L. Bandounas, J. H. De Winde, and H. J. Ruijssenaars. 2010. Isolation and characterization of Cupriavidus basilensis HMF14 for biological removal of inhibitors from lignocellulosic hydrolysate. Microbial Biotechnology 3:336-343.

http://www3.interscience.wiley.com/journal/123213975/abstract

Wisselink, H. W., M. J. Toirkens, M. D. R. F. Berriel, A. A. Winkler, J. P. Van Dijken, J. T. Pronk, and A. J. A. Van Maris. 2007. Engineering of Saccharomyces cerevisiae for efficient anaerobic alcoholic fermentation of L-arabinose. Applied and Environmental Microbiology 73:4881-4891.

http://aem.asm.org/cgi/content/full/73/15/4881?view=long&pmid=17545317

Zeeman, A. M., M. Kuyper, J. T. Pronk, J. P. Van Dijken, and H. Y. Steensma. 2000. Regulation of pyruvate metabolism in chemostat cultures of Kluyveromyces lactis CBS 2359. Yeast 16:611-620.

Zelle, R. M., E. De Hulster, W. A. Van Winden, P. De Waard, C. Dijkema, A. A. Winkler, J. M. A. Geertman, J. P. Van Dijken, J. T. Pronk, and A. J. A. Van Maris. 2008. Malic acid production by Saccharomyces cerevisiae: Engineering of pyruvate carboxylation, oxaloacetate reduction, and malate export. Applied and Environmental Microbiology 74:2766-2777.

http://aem.asm.org/cgi/content/full/74/9/2766?view=long&pmid=18344340